<h1 id="tools"><a aria-hidden="true" class="anchor-heading icon-link" href="#tools"></a>Tools</h1>
<hr>
<strong>Children</strong>
<ol>
<li><a href="/commons-dws-public/notes/UmlRvcLvP9L4FMB6sojez">Argumentation</a></li>
<li><a href="/commons-dws-public/notes/6ooxuf27zzf3grb14o18qf2">Awk</a></li>
<li><a href="/commons-dws-public/notes/c86nngz4muwhkdo85o472yd">Bibliography</a></li>
<li><a href="/commons-dws-public/notes/a92wxucyqxfzriyughfpfsr">CLI</a></li>
<li><a href="/commons-dws-public/notes/vDTgZL9UHWqYtBFdtD3vK">Cfm</a></li>
<li><a href="/commons-dws-public/notes/kz7svgpuy5n6tqy91qsb56h">Chemoinformatics</a></li>
<li><a href="/commons-dws-public/notes/69ekb2qhuwukr0jwrzy6tnw">Click</a></li>
<li><a href="/commons-dws-public/notes/x30knc3wxcq0xzbexaqsjne">Code</a></li>
<li><a href="/commons-dws-public/notes/373694o1o6ocqohko4um7c9">Copier</a></li>
<li><a href="/commons-dws-public/notes/tuhoesuwgnth0ce5jx70ro2">Dendron</a></li>
<li><a href="/commons-dws-public/notes/kjCZnMBrXYokZny7loss4">Git</a></li>
<li><a href="/commons-dws-public/notes/ex16xupu0e4ptkkw95r766z">Graphs</a></li>
<li><a href="/commons-dws-public/notes/p5zasu8avqzo7ytkgz6pars">Hardware</a></li>
<li><a href="/commons-dws-public/notes/2rvclk21kfedpvxuzjpizi7">Hinode</a></li>
<li><a href="/commons-dws-public/notes/2npxodkvs5jk6p1eksi551b">Jupyter</a></li>
<li><a href="/commons-dws-public/notes/WmsDpioYngLzVLy3wRsbn">Km</a></li>
<li><a href="/commons-dws-public/notes/lco50o42dfeph5i5f2k981w">Limesurvey</a></li>
<li><a href="/commons-dws-public/notes/7j751iW723tW60Vy9enKU">Lims</a></li>
<li><a href="/commons-dws-public/notes/sw67lr6069gwhqmdym2l9na">Mcp</a></li>
<li><a href="/commons-dws-public/notes/37z15xh0w4eh1hvr3y0mzm6">Metabolomics</a></li>
<li><a href="/commons-dws-public/notes/s9gzk7nphtjzmpdqvk5y4vj">Mkdocs</a></li>
<li><a href="/commons-dws-public/notes/z3JGBaIV6l5uiV7u6CkgU">Mnemonics</a></li>
<li><a href="/commons-dws-public/notes/8MhwH842WvEQBTcSABDiK">Mongo</a></li>
<li><a href="/commons-dws-public/notes/hpnaglyhnb48vuiniqecnqf">Nginx</a></li>
<li><a href="/commons-dws-public/notes/vpipqrf6bwtbyttwsox7m7k">Organization</a></li>
<li><a href="/commons-dws-public/notes/7q8dRN3AaQSbQhcb5JIiz">Pg</a></li>
<li><a href="/commons-dws-public/notes/40po5od17ekcr1e77dluxao">Poetry</a></li>
<li><a href="/commons-dws-public/notes/jxirto6voqd1stetp03p78y">Snakemake</a></li>
<li><a href="/commons-dws-public/notes/fDvcQ3e0zwzNdAgmEWZlp">Sql</a></li>
<li><a href="/commons-dws-public/notes/sk4m9gq7vz2t9phcxlxvqpw">Utils</a></li>
<li><a href="/commons-dws-public/notes/zhc9hhpaobkbo4e2votv6wr">Virtuoso</a></li>
<li><a href="/commons-dws-public/notes/AUPz9SrGJPrGmpKhCwiT2">Visualization</a></li>
<li><a href="/commons-dws-public/notes/ykyXmoqr752B7Eo1mKkBF">Web</a></li>
<li><a href="/commons-dws-public/notes/4zmlbmcp6q4q69ycvhavzr6">Wget</a></li>
<li><a href="/commons-dws-public/notes/nmnpsy2e1rwqnqgurogi2u6">Xpra</a></li>
</ol>

Tools

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions

