2023-04-13
This is PMAS's COMMONS Lab daily Open Notebook.
Today is 2023.04.13
Todo today
Have a look at the COMMONS research discussion forum
- https://github.com/orgs/commons-research/discussions
Doing
Metabolite annotation Audrey and Stephanie
Annotation with https://github.com/mandelbrot-project/met_annot_enhancer
https://github.com/digital-botanical-gardens-initiative/emi_anacardiaceae/tree/main
Working on the emi_batch_00001 (Anacardiaceae) we found two interesting clusters in Pseudospondias extracts
https://pubchem.ncbi.nlm.nih.gov/compound/21581584 Ohchinolide B derivatives possibly.
https://academic.oup.com/femsle/article/120/3/267/520869
Paused
Done
Notes
Mid Thesis presentation Audrey le Cabbec
- worked on insects metabolites in Rennes (ynsect)
- worked with P Coulerie in New Caledonia
ICOA
Analytical, Affinity and Bioactive Strategies Cosmetic valley (Tours, Blois, Rouen) Orlean area of high horticultural prod
Eclipta alba
- Culture of non native plants (Eclipta alba)
Presence of coumestan
5 enzymatic test (COX, elastase, ROS etc.)
Q : why such difference in the raw extracts conc used for testing ? Q : can you explain the heatmap again ? Q : stats significative diff Q : how did you annotate the compounds ? Which software ? Which DB ?
C forskohlii
which gave the name to the plant ?
How do you quantify forskolin iteratively ?
Conclusion
explore the coumestan biosynthetic pathway. Why exactly ?
### Perspectives and collab in UniFr
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Lonicera
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Euonymus