<h1 id="2024-02-29"><a aria-hidden="true" class="anchor-heading icon-link" href="#2024-02-29"></a>2024-02-29</h1>
<h1 id="pamreins-daily-open-notebook-commons-lab"><a aria-hidden="true" class="anchor-heading icon-link" href="#pamreins-daily-open-notebook-commons-lab"></a>PAMREIN's daily Open Notebook (COMMONS Lab)</h1>
<h2 id="todo---check-github"><a aria-hidden="true" class="anchor-heading icon-link" href="#todo---check-github"></a>Todo - <a href="https://github.com/orgs/commons-research/projects/2/views/1">Check Github</a></h2>
<p>-[]</p>
<h2 id="meetings"><a aria-hidden="true" class="anchor-heading icon-link" href="#meetings"></a>Meetings</h2>
<h2 id="daily-report-what-did-i-learned"><a aria-hidden="true" class="anchor-heading icon-link" href="#daily-report-what-did-i-learned"></a>Daily report (What did I learned?)</h2>
<p><a href="/commons-dws-public/notes/3xju2sc89n29uayg8f6hega">Python and Packages</a></p>
<p>Dendron refractor:
<a href="https://wiki.dendron.so/notes/srajljj10V2dl19nCSFiC/">https://wiki.dendron.so/notes/srajljj10V2dl19nCSFiC/</a></p>
<h3 id="vscode-program-private"><a aria-hidden="true" class="anchor-heading icon-link" href="#vscode-program-private"></a>VSCode <a title="Private" href="https://wiki.dendron.so/notes/hfyvYGJZQiUwQaaxQO27q.html" target="_blank" class="private">#program (Private)</a></h3>
<div class="table-responsive">
















<table><thead><tr><th><strong>command</strong></th><th><strong>description</strong></th></tr></thead><tbody><tr><td><code>Ctrl + Shift + P</code></td><td>Open search for commands</td></tr><tr><td><code>Ctrl + P</code></td><td>Open search for files.</td></tr></tbody></table></div>
<h3 id="poetry-program-private"><a aria-hidden="true" class="anchor-heading icon-link" href="#poetry-program-private"></a>Poetry <a title="Private" href="https://wiki.dendron.so/notes/hfyvYGJZQiUwQaaxQO27q.html" target="_blank" class="private">#program (Private)</a></h3>
<p>Changes made in config file (<code>poetry config --list</code>):
<code>virtualenvs.path = "{cache-dir}/virtualenvs"  # /home/popeye/.cache/pypoetry/virtualenvs</code> to
<code>/home/popeye/.pyenv/versions</code>   </p>
<h2 id="future-perspective"><a aria-hidden="true" class="anchor-heading icon-link" href="#future-perspective"></a>Future perspective</h2>
<h2 id="keywords"><a aria-hidden="true" class="anchor-heading icon-link" href="#keywords"></a>Keywords</h2>
<p><a href="/commons-dws-public/notes/3ca85tg6eqf78kgql1mj3vl">Abbreviations</a></p>

PAMREIN's daily Open Notebook (COMMONS Lab)

2024-02-29

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions



command	description
`Ctrl + Shift + P`	Open search for commands
`Ctrl + P`	Open search for files.

2024-02-29

PAMREIN's daily Open Notebook (COMMONS Lab)

Todo - Check Github

Meetings

Daily report (What did I learned?)

VSCode #program (Private)

Poetry #program (Private)

Future perspective

Keywords