<h1 id="2025-03-17"><a aria-hidden="true" class="anchor-heading icon-link" href="#2025-03-17"></a>2025-03-17</h1>
<h1 id="this-is-jades-commons-lab-daily-open-notebook"><a aria-hidden="true" class="anchor-heading icon-link" href="#this-is-jades-commons-lab-daily-open-notebook"></a>This is Jade's COMMONS Lab daily Open Notebook.</h1>
<p>Today is 2025.03.17</p>
<h2 id="todo-today"><a aria-hidden="true" class="anchor-heading icon-link" href="#todo-today"></a>Todo today</h2>
<h3 id="have-a-look-at-the-commons-research-discussion-forum"><a aria-hidden="true" class="anchor-heading icon-link" href="#have-a-look-at-the-commons-research-discussion-forum"></a>Have a look at the COMMONS research discussion forum</h3>
<pre><code>- https://github.com/orgs/commons-research/discussions
</code></pre>
<h2 id="to-do-asap"><a aria-hidden="true" class="anchor-heading icon-link" href="#to-do-asap"></a>To do ASAP</h2>
<ul class="contains-task-list">
<li class="task-list-item"><input type="checkbox" disabled> Learn python </li>
<li class="task-list-item"><input type="checkbox" disabled> Import excel data &#x26; script python </li>
</ul>
<h2 id="doing"><a aria-hidden="true" class="anchor-heading icon-link" href="#doing"></a>Doing</h2>
<ul>
<li>learning coding with git &#x26; gitub </li>
</ul>
<h2 id="done"><a aria-hidden="true" class="anchor-heading icon-link" href="#done"></a>Done</h2>
<h2 id="notes"><a aria-hidden="true" class="anchor-heading icon-link" href="#notes"></a>Notes</h2>
<ul>
<li>Isolating SMILES, MF &#x26; Name from the excel list </li>
</ul>
<h2 id="todo-tomorrow-one-day--or-never"><a aria-hidden="true" class="anchor-heading icon-link" href="#todo-tomorrow-one-day--or-never"></a>Todo tomorrow, one day ... or never</h2>
<h3 id="ligne-de-commande"><a aria-hidden="true" class="anchor-heading icon-link" href="#ligne-de-commande"></a>Ligne de Commande</h3>
<ul class="contains-task-list">
<li class="task-list-item"><input type="checkbox" checked disabled> Check <a href="https://openclassrooms.com/fr/courses/6173491-apprenez-a-utiliser-la-ligne-de-commande-dans-un-terminal">https://openclassrooms.com/fr/courses/6173491-apprenez-a-utiliser-la-ligne-de-commande-dans-un-terminal</a> </li>
<li class="task-list-item"><input type="checkbox" checked disabled> Check <a href="https://fribash.netlify.ap">https://fribash.netlify.ap</a> </li>
</ul>
<h3 id="git-et-github"><a aria-hidden="true" class="anchor-heading icon-link" href="#git-et-github"></a>git et Github</h3>
<p>[] Check <a href="https://openclassrooms.com/fr/courses/7162856-gerez-du-code-avec-git-et-github">https://openclassrooms.com/fr/courses/7162856-gerez-du-code-avec-git-et-github</a>
[] Check <a href="https://carpentries-incubator.github.io/git-novice-branch-pr/">https://carpentries-incubator.github.io/git-novice-branch-pr/</a></p>
<h3 id="python"><a aria-hidden="true" class="anchor-heading icon-link" href="#python"></a>python</h3>
<p>[] Check <a href="https://openclassrooms.com/fr/courses/7168871-apprenez-les-bases-du-langage-python">https://openclassrooms.com/fr/courses/7168871-apprenez-les-bases-du-langage-python</a>
[] Check <a href="https://realpython.com/python-first-steps/">https://realpython.com/python-first-steps/</a> </p>
<h3 id="linux"><a aria-hidden="true" class="anchor-heading icon-link" href="#linux"></a>Linux</h3>
<p>[] Check <a href="https://openclassrooms.com/fr/courses/7170491-initiez-vous-a-linux/7251641-tirez-un-maximum-de-ce-cours-22">https://openclassrooms.com/fr/courses/7170491-initiez-vous-a-linux/7251641-tirez-un-maximum-de-ce-cours-22</a> </p>
<h2 id="today-i-learned-that"><a aria-hidden="true" class="anchor-heading icon-link" href="#today-i-learned-that"></a>Today I learned that</h2>
<ul>
<li></li>
</ul>

Have a look at the COMMONS research discussion forum

This is Jade's COMMONS Lab daily Open Notebook.

2025-03-17

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions

