2024-03-29

This is PMAS's COMMONS Lab daily Open Notebook.

Today is 2024.03.29

Todo today

Have a look at the COMMONS research discussion forum

- https://github.com/orgs/commons-research/discussions

Daily work on the Open Science for natural products research Viewpoint

See Viewpoint

Doing

Struglling to serialize a .yaml, hash the contents, and save the hash + serialized contents to a tsv file.

Lets work with minimal examples

mapp_project : mapp_project_00017

options:
  gnps_column_for_boxplots : 
    factor_name : 'process'

filter_sample_type :
  mode : 'include'
  factor_name : 'sample_type'
  levels :
   - 'BK' 
   - 'BLANK'

mapp_project : mapp_project_00017

options:
  gnps_column_for_boxplots : 
    factor_name : 'process'

filter_sample_type :
  mode : 'include'
  factor_name : 'sample_type'
  levels :
   - 'BK' 
   - 'QC'

Should yield as tsv

mapp_project options.gnps_column_for_boxplots.factor_name filter_sample_type.mode filter_sample_type.factor_name filter_sample_type.levels hash mapp_project_00017 process include sample_type BK, BLANK mapp_project_00017 process include sample_type BK, QC

Please propose me a mechansim in R to do this.

library(yaml)
library(digest)

# Read the yaml files

yaml1 <- yaml::read_yaml('file1.yaml')
yaml2 <- yaml::read_yaml('file2.yaml')

# Serialize the yaml files

yaml1_serialized <- yaml::as.yaml(yaml1)
yaml2_serialized <- yaml::as.yaml(yaml2)

# Hash the serialized yaml files

hash1 <- digest::digest(yaml1_serialized)
hash2 <- digest::digest(yaml2_serialized)

# Save the hash and the serialized yaml files to a tsv


 




## Paused

## Done

## Notes

## Todo tomorrow, one day ... or never 


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## Today I learned that

- o