2023-04-25

This is PMAS's COMMONS Lab daily Open Notebook.

Today is 2023.04.25

Todo today

Doing

Customizing website

https://github.com/wowchemy/wowchemy-hugo-themes/issues/147

Call Antonio

Paused

| null | - [ ] point Lendita | 2023-04-25 | #commons (Private), #dbgi (Private) |

@Lendita (Private)

• Manubot for report handling Read : https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007128 Explore : https://manubot.org/ Read : Tree, maps and theorems

@oolonek (Private)

Clone the https://github.com/digital-botanical-gardens-initiative/dbgi-green-paper and make it a template for reports

https://docs.github.com/en/repositories/creating-and-managing-repositories/duplicating-a-repository

Actually it could be a bad idea to duplicate a manubot repo and maybe the best way to go it to follow the establishment of a new repo. Will create one for Lendita report And think of a tuto is the instructions on manubot's website are not clear enough https://github.com/manubot/rootstock/blob/main/SETUP.md

Preparaing SBL.20004 2023 course material teaching.master.SBL20004.2023 (Private)

Done

Point Audrey. Creating a git repo in commons and moving data from the commons server to local pc

Notes

Todo tomorrow, another day ... or never !

Today I learned that

📖 Comment what should be commented and pass this daily Notebook to it's Open Notebook counterpart

mkdir -p pos/{metadata/{original,treated},results/{cytoscape,met_annot_enhancer,metaboanalyst,mzmine,stats,sirius,tmp},src} && touch pos/{metadata/{original/.gitignore,treated/.gitignore},results/{cytoscape/.gitignore,met_annot_enhancer/.gitignore,metaboanalyst/{.gitignore,placeholder.out},mzmine/{.gitignore,placeholder.out},stats/.gitignore,sirius/{.gitignore,placeholder.out},tmp/.gitignore},src/.gitignore}