2025-02-21
This is PMAS's COMMONS Lab daily Open Notebook.
Today is 2025.02.21
Todo today
Have a look at the COMMONS research discussion forum
- https://github.com/orgs/commons-research/discussions
Daily work on the Open Science for natural products research Viewpoint
See Viewpoint
Doing
Chat wioth Javier on Scholia Possibility to establisha DB of NP isolated in Chili with their geographical occurences.
We start with the example of https://scholia.toolforge.org/chemical/Q82866929
https://scholia.toolforge.org/taxon/Q15513067#metabolome
This one is connected to the GBIF id https://www.gbif.org/species/5343387
We manually created the taxon ranmge properties for this one
https://www.wikidata.org/wiki/Q15513067
So now we can check for molecules found in the Astragalus genera for which the taxon range includes Chile. https://w.wiki/D9aT
We can observe that few taxa have in fact Chile as a taxonrang https://w.wiki/D9an
We started with Tiago's http://tiago.bio.br/gbif_range_to_wikidata/
Lets see how we can use / adapt this for our use case
For countries, the url should be encoded
We started to investigate the possibility to map traditional uses from taxon to indegeneous peoples
https://www.wikidata.org/wiki/Q158780
Discussing about ethopharmocological KG
https://ieeexplore.ieee.org/abstract/document/10443268 https://www.nature.com/articles/s41597-023-02757-0 https://gitub.u-bordeaux.fr/erias/oregano
Directus/Qfield
We try to set up a EMI project for Javier (temporary while we have the EMI data portal up and running)
We could create both a qfieldcloud and directus username However we are stuck at the stage of Project creation (https://emi-collection.unifr.ch/qfieldcloud/admin/core/project/add/) as we cannot setup the owner. To be checked with Edouard.
This , https://emi-collection.unifr.ch/qfieldcloud/admin/auditlog/logentry/ , for example returns a 500
Paused
Done
Notes
Todo tomorrow, one day ... or never
Today I learned that
- o