<h1 id="meetings"><a aria-hidden="true" class="anchor-heading icon-link" href="#meetings"></a>Meetings</h1>
<h1 id="tuesday-26-september-2023"><a aria-hidden="true" class="anchor-heading icon-link" href="#tuesday-26-september-2023"></a>Tuesday 26 September 2023</h1>
<h3 id="thursday-19-september-2024"><a aria-hidden="true" class="anchor-heading icon-link" href="#thursday-19-september-2024"></a>Thursday 19 September 2024</h3>
<h4 id="assembled-and-annotated-genomes"><a aria-hidden="true" class="anchor-heading icon-link" href="#assembled-and-annotated-genomes"></a>Assembled and annotated genomes</h4>
<ul>
<li>Avec qui peut on faire du génome complet de 2 champi, 3 actinos 1 bacterie.
Laurent Falquet.</li>
</ul>
<p><a href="https://www.ngs.unibe.ch/about_us/contact/">https://www.ngs.unibe.ch/about_us/contact/</a></p>
<p>Pamel Nicolson</p>
<h4 id="metabolomics"><a aria-hidden="true" class="anchor-heading icon-link" href="#metabolomics"></a>Metabolomics</h4>
<h4 id="paired-omics-platform"><a aria-hidden="true" class="anchor-heading icon-link" href="#paired-omics-platform"></a>Paired omics platform</h4>
<p><a href="https://pairedomicsdata.bioinformatics.nl/">https://pairedomicsdata.bioinformatics.nl/</a></p>
<p>20231131_PMA_RO_01_15_01_HM.mzML
20231131_PMA_RO_01_15_02_HM.mzML
20231131_PMA_RO_01_15_03_HM.mzML
20231131_PMA_RO_01_15_04_HM.mzML
20231131_PMA_RO_01_15_05_HM.mzML
20231131_PMA_RO_01_15_06_HM.mzML
20231131_PMA_RO_01_15_07_HM.mzML
20231131_PMA_RO_01_15_08_HM.mzML
20231131_PMA_RO_01_15_09_HM.mzML
20231131_PMA_RO_01_15_10_HM.mzML
20231131_PMA_RO_01_15_11_HM.mzML
20231131_PMA_RO_01_15_12_HM.mzML
20231131_PMA_RO_01_15_13_HM.mzML
20231131_PMA_RO_01_15_14_HM.mzML
20231131_PMA_RO_01_15_15_HM.mzML
20231131_PMA_RO_01_15_16_HM.mzML
20231131_PMA_RO_01_15_17_HM.mzML
20231131_PMA_RO_01_15_18_HM.mzML
20231131_PMA_RO_01_15_19_HM.mzML
20231131_PMA_RO_01_15_20_HM.mzML
20231131_PMA_RO_01_15_21_HM.mzML
20231131_PMA_RO_01_15_22_HM.mzML
20231131_PMA_RO_01_15_23_HM.mzML
20231131_PMA_RO_01_15_24_HM.mzML
20231131_PMA_RO_01_15_25_HM.mzML
20231131_PMA_RO_01_15_26_HM.mzML
20231131_PMA_RO_01_15_27_HM.mzML
20231131_PMA_mapp_post_00_HM.mzML
20231131_PMA_mapp_pre_00_HM.mzML
20231131_PMA_mapp_pre_01_HM.mzML</p>

Meetings

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions

