<h1 id="docker-singularity"><a aria-hidden="true" class="anchor-heading icon-link" href="#docker-singularity"></a>Docker Singularity</h1>
<p>Thursday 14 October 2021</p>
<p>Zoom meetings:
The lectures will be streamed on Zoom with the following link:
<a href="https://us02web.zoom.us/j/87811184973?pwd=NFRpUzI4QWFQUks0OXJyalN0NS9tQT09">https://us02web.zoom.us/j/87811184973?pwd=NFRpUzI4QWFQUks0OXJyalN0NS9tQT09</a>
Meeting ID: 878 1118 4973
Passcode: 725487</p>
<p>Course website:
You can find the course materials web page in this link:
<a href="https://sib-swiss.github.io/containers-introduction-training">https://sib-swiss.github.io/containers-introduction-training</a></p>
<p>Please make sure to have read the page with the technical requirements previous to the course.</p>
<p>Slack workspace:
We will use a Slack workspace to work collaboratively. Please make sure to have connected to this space before the course starts.</p>
<p>Google Doc:
We have also created a gdoc to simplify the exchanges of information with you during the lectures: Link Google doc. We suggest that you keep this document open during the course.</p>
<p>Link Google doc <a href="https://urldefense.com/v3/__https://docs.google.com/document/d/1U-kMm559CtcYL9MB45ZHLmvtQmm_bBS7E8qzyEAD3WQ/edit*__;Iw!!Dc8iu7o!k0lSfOEHZG-2pQf5rv4qdjenqaHDJBiOOyMbCoar9ZIsGb91eeOCNB_VVCLYifckXHa1S58c$">https://urldefense.com/v3/__https://docs.google.com/document/d/1U-kMm559CtcYL9MB45ZHLmvtQmm_bBS7E8qzyEAD3WQ/edit*__;Iw!!Dc8iu7o!k0lSfOEHZG-2pQf5rv4qdjenqaHDJBiOOyMbCoar9ZIsGb91eeOCNB_VVCLYifckXHa1S58c$</a></p>
<h1 id="concepts"><a aria-hidden="true" class="anchor-heading icon-link" href="#concepts"></a>Concepts</h1>
<h2 id="image"><a aria-hidden="true" class="anchor-heading icon-link" href="#image"></a>Image</h2>
<p>read-only
stored on longer term
can be used as a base</p>
<h2 id="container"><a aria-hidden="true" class="anchor-heading icon-link" href="#container"></a>Container</h2>
<p>based on the image
short lived
usually for minor adjustements </p>
<p>(Apparently the delay in the suggestion mode should be enough to mange the annoying suggestions.
Another option would be to set up the acceptation key to somethinh other than automatic.)</p>
<hr>
<strong>Children</strong>
<ol>
<li><a href="/commons-dws-public/notes/k2ZyWqz1dvbZP4gWGXlzf">Labbook</a></li>
</ol>

Docker Singularity

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions

