<h1 id="mibig"><a aria-hidden="true" class="anchor-heading icon-link" href="#mibig"></a>Mibig</h1>
<h1 id="context"><a aria-hidden="true" class="anchor-heading icon-link" href="#context"></a>Context</h1>
Recently Marnix Medema twitted about their necessity to furnish MIBIG with further BGC &#x3C;-> metabolites pairs.
<a href="https://twitter.com/marnixmedema/status/1431190836289617923">https://twitter.com/marnixmedema/status/1431190836289617923</a>
This is an "annotathon"
Maybe LOTUS could help here.
<a href="https://mibig.secondarymetabolites.org/">https://mibig.secondarymetabolites.org/</a>
§# Log book 
2021-08-28 17:00
Let's see is Thiago's app can help here <a href="/commons-dws-public/notes/CVuPQv8R3vmHQHwrNlyZF">Apps</a>
The idea would be to find a list of paper having described both a metabolites and it's associated BGC
Let's try a SPARQL Query as following :
<a href="https://w.wiki/3yN7">https://w.wiki/3yN7</a>
detailed <a href="https://w.wiki/3yNw">https://w.wiki/3yNw</a>
with single ref <a href="https://w.wiki/3yNL">https://w.wiki/3yNL</a>
limited to specific strains <a href="https://w.wiki/3yPf">https://w.wiki/3yPf</a>
Posted <a href="https://twitter.com/allard_pm/status/1431640111440138245">https://twitter.com/allard_pm/status/1431640111440138245</a>
And updated at 2021-09-07 18:10
<hr>
Backlinks
<ul>
<li><a href="/commons-dws-public/notes/gyjosjmyok544holtu4m195">2024-02-20</a></li>
</ul>

Mibig

Concrete steps to access and contribute to the DBGI Dendron


![](/assets/images/allard-lab.jpg)

Welcome the the COMMONS Lab Open Dendron !

In the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.

For this we use the [Dendron](https://www.dendron.so/) system as a mean to efficiently capture notes and publish them.

## What is this note

This note is a succinct tutorial note aiming to get you started in the use of the COMMONS Lab Dendron.

## Tutorial

### Dendron. 

#### What is Dendron ?

> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
> 
> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.

#### Where to get more info on Dendron ?

- You can get more information in the Dendron system at the official website www.dendron.so
- All the Dendron documentation is hosted here https://wiki.dendron.so/. It is, obviously, a Dendron itself.

#### Concrete steps to access and contribute to the DBGI Dendron

1. Install [VSCode](https://code.visualstudio.com/download)
2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace 
3. Clone the COMMONS Dendron repo

    In your terminal
    ```
    git clone https://github.com/commons-research/commons-dws-public.git
    ```
4. In VSCode open (File/Open) the cloned repository.
5. Voila ! You should now be in the COMMONS Lab Open Dendron.

Feel free to explore and contribute.
A first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]


## Questions, comments, suggestions ?

Feel free to contribute here https://github.com/orgs/commons-research/discussions

